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Preset of Configuration for the HYAK Cluster

Source: R/slurmworkflow_helpers.R
swf_configs_hyak.Rd

Preset of Configuration for the HYAK Cluster

Usage

swf_configs_hyak(
  hpc = "klone",
  partition = "csde",
  r_version = "4.2.2",
  mail_user = NULL
)

Arguments

hpc

Which HPC to use on HYAK (either "klone" or "mox")

partition

Which partition to use on HYAK (either "csde" or "ckpt")

r_version

Which version of R to load

mail_user

The mail address to send the messages to, default is NULL (see 'sbatch –mail-type' argument)

Value

a list containing default_sbatch_opts, renv_sbatch_opts and r_loader (see the "hpc_configs" section)

hpc_configs

  1. default_sbatch_opts is a list of sbatch options to be passed to slurmworkflow::create_workflow.

  2. renv_sbatch_opts is a list of sbatch options to be passed to slurmworkflow::step_tmpl_renv_restore. It provides sane defaults for building the dependencies of an R project using renv

  3. r_loader is a set of bash lines to make the R software available. This is passed to the setup_lines arguments of the slurmworkflow::step_tmpl_ functions that requires it.