Step Template to Run a Bash Script

Step Template to Run a Bash Script

Usage

step_tmpl_bash_script(bash_script)

Arguments

bash_script

Path to the script to be run by the workflow step

Value

a template function to be used by add_workflow_step

Step Template

Step Templates are helper functions to be used within add_workflow_step. Some basic ones are provided by the slurmworkflow package. They instruct the workflow to run either a bash script, a set of bash lines given as a character vector or an R script. Additional Step Templates can be created to simplify specific tasks. The easiest way to do so is as wrappers around existing templates.