Step Template to Run Bash Statements

Step Template to Run Bash Statements

Usage

step_tmpl_bash_lines(bash_lines)

Arguments

bash_lines

Vector of bash lines to be run by the workflow step

Value

a template function to be used by add_workflow_step

Step Template

Step Templates are helper functions to be used within add_workflow_step. Some basic ones are provided by the slurmworkflow package. They instruct the workflow to run either a bash script, a set of bash lines given as a character vector or an R script. Additional Step Templates can be created to simplify specific tasks. The easiest way to do so is as wrappers around existing templates.