Package index

All functions

EpiModelHPC-package EpiModelHPC

EpiModel Extensions for High-Performance Computing

add_doctor_register_step() add_doctor_teardown_step()

Deploy-Doctor Watch-List Workflow Steps

get_scenarios_batches_infos()

Helper function to access the file name elements of scenarios

get_scenarios_tibble_infos()

Helper function to access the infos on merged scenarios data.frame

hpc_doctor_script()

Path to a Bundled HPC Doctor Script

make_calibrated_scenario()

Make an EpiModel scenario using the result of an swfcalib calibration

merge_netsim_scenarios()

Create a Single Sim File per Scenarios Using the Files From netsim_scenarios

merge_netsim_scenarios_tibble()

Create a Single Sim File per Scenarios Using the Files From netsim_scenarios

netsim_run_one_scenario()

Run one netsim call with a scenario and saves the results deterministically

netsim_run_swfcalib_scenario()

Run one netsim call with the result of an swfcalib calibration

netsim_scenarios()

Function to run EpiModel network simulations with scenarios

netsim_scenarios_setup()

Helper function to create the parameters for netsim_run_one_scenario

netsim_swfcalib_output()

Function to run an EpiModel sim with the result of an swfcalib calibration

netsim_swfcalib_output_setup()

Helper function to create the parameters for netsim_run_swfcalib_scenario

step_tmpl_merge_netsim_scenarios()

Step Template to Create a Single Sim File per Scenarios Using the Files From netsim_scenarios

step_tmpl_merge_netsim_scenarios_tibble()

Step Template to Create a Single Sim File per Scenarios Using the Files From netsim_scenarios

step_tmpl_netsim_scenarios()

Step template to run EpiModel network simulations with scenarios

step_tmpl_netsim_swfcalib_output()

Step template to run sims with the result of an swfcalib calibration

step_tmpl_renv_restore()

Step template to update a project renv

swf_cleanup_r_workers()

Bash Lines to Reap a Job's Own R Workers on Cancel or Timeout

swf_configs_hyak()

Preset of Configuration for the HYAK Cluster

swf_configs_rsph()

Preset of Configuration for the RSPH Cluster

swfcalib_proposal_to_scenario()

Convert an swfcalib Proposal into an EpiModel Scenario