Run one netsim call with the result of an swfcalib calibration — netsim_run_swfcalib

Run one netsim call with the result of an swfcalib calibration

Usage

netsim_run_swfcalib_scenario(
  calib_object,
  batch_num,
  path_to_x,
  param,
  init,
  control,
  libraries,
  output_dir,
  n_batch,
  n_rep,
  n_cores,
  save_all,
  save_elements
)

Arguments

calib_object: a formatted calibration object
batch_num: The batch number, calculated from the number of replications and CPUs required.
path_to_x: Path to a Fitted network model object saved with saveRDS. (See the x argument to the EpiModel::netsim function)
param: Model parameters, as an object of class param.net.
init: Initial conditions, as an object of class init.net.
control: Control settings, as an object of class control.net.
libraries: A character vector containing the name of the libraries required for the model to run. (e.g. EpiModelHIV or EpiModelCOVID)
output_dir: The folder where the simulation files are to be stored.
n_batch: The number of batches to be run ceiling(n_rep / n_cores).
n_rep: The number of replication to be run for each scenario.
n_cores: number of cores to run the processing on
save_all: A flag instructing to save the result of the EpiModel::netsim call as is if TRUE.
save_elements: A character vector of elements to keep from the netsim object if save_all is FALSE